.. scAtlasVAE documentation master file, created by
   sphinx-quickstart on Tue Apr 25 13:31:22 2023.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to scAtlasVAE's documentation!
============================================

.. |Maintenance yes| image:: https://img.shields.io/badge/Maintained%3F-yes-green.svg
   :target: https://github.com/WanluLiuLab/scAtlasVAE

|PyPI version|

.. |PyPI version| image:: https://img.shields.io/badge/pypi-v0.10.11-blue
   :target: https://pypi.org/project/scatlasvae

|Docs passing|

.. |Docs passing| image:: https://readthedocs.org/projects/scatlasvae/badge/?version=latest
   :target: https://scatlasvae.readthedocs.io/en/latest/?badge=latest


.. toctree::
   :maxdepth: 4
   :caption: Contents:

Contents
--------

.. toctree::

   intro
   preprocessing
   tutorial_cd8
   gex_integration
   gex_transfer
   gex_retraining
   api