scAtlasVAE
Introduction
Preprocessing Immune Profiling Data
Automatic transfer to pan-disease CD8+ T cell atlas
Integrating Multi-source Gene Expression (GEX)
Transfering Multi-source Gene Expression (GEX)
Re-Training Gene Expression (GEX)
API
scAtlasVAE
Index
Index
C
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F
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G
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L
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P
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R
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S
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U
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V
C
cell_type_alignment() (in module scatlasvae.tl)
F
fit() (scatlasvae.model._gex_model.scAtlasVAE method)
G
get_config() (scatlasvae.model._gex_model.scAtlasVAE method)
get_default_device() (in module scatlasvae.ut)
L
load_from_disk() (scatlasvae.model._gex_model.scAtlasVAE method)
P
partial_load_state_dict() (scatlasvae.model._gex_model.scAtlasVAE method)
process() (scatlasvae.pp.VDJPreprocessingV1Human method)
(scatlasvae.pp.VDJPreprocessingV1Mouse method)
R
run_transfer() (scatlasvae.pipeline method)
S
save_to_disk() (scatlasvae.model._gex_model.scAtlasVAE method)
scAtlasVAE (class in scatlasvae.model)
setup_anndata() (scatlasvae.model._gex_model.scAtlasVAE static method)
U
umap_alignment() (in module scatlasvae.tl)
V
VDJPreprocessingV1Human (class in scatlasvae.pp)
VDJPreprocessingV1Mouse (class in scatlasvae.pp)