scAtlasVAE
  • Introduction
  • Preprocessing Immune Profiling Data
  • Automatic transfer to pan-disease CD8+ T cell atlas
  • Integrating Multi-source Gene Expression (GEX)
  • Transfering Multi-source Gene Expression (GEX)
  • Re-Training Gene Expression (GEX)
  • API
scAtlasVAE
  • Index

Index

C | F | G | L | P | R | S | U | V

C

  • cell_type_alignment() (in module scatlasvae.tl)

F

  • fit() (scatlasvae.model._gex_model.scAtlasVAE method)

G

  • get_config() (scatlasvae.model._gex_model.scAtlasVAE method)
  • get_default_device() (in module scatlasvae.ut)

L

  • load_from_disk() (scatlasvae.model._gex_model.scAtlasVAE method)

P

  • partial_load_state_dict() (scatlasvae.model._gex_model.scAtlasVAE method)
  • process() (scatlasvae.pp.VDJPreprocessingV1Human method)
    • (scatlasvae.pp.VDJPreprocessingV1Mouse method)

R

  • run_transfer() (scatlasvae.pipeline method)

S

  • save_to_disk() (scatlasvae.model._gex_model.scAtlasVAE method)
  • scAtlasVAE (class in scatlasvae.model)
  • setup_anndata() (scatlasvae.model._gex_model.scAtlasVAE static method)

U

  • umap_alignment() (in module scatlasvae.tl)

V

  • VDJPreprocessingV1Human (class in scatlasvae.pp)
  • VDJPreprocessingV1Mouse (class in scatlasvae.pp)

© Copyright 2024, Ziwei Xue.

Built with Sphinx using a theme provided by Read the Docs.